Microarray Facility - Nijmegen
For more information about equipment and/or the available microarray platforms,
please contact Marcel Nelen
for collaboration possibilities.
Equipment
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Affymetrix |
Affymetric Genechip System
Genechip Scanner 3000 + Autoloader 7G field upgrade for 500K SNP arrays 2x Fluidic Station 450 2x Hybridisation Oven 640 Affymetrix Software: GCOS, GDAS, CCNT 3rd party Software: CNAG, Genespring, MatLab, Pathway Studio |
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Genomic Solutions |
Genemachines Omnigrid 100 48 SMP3 pins, 100 slides ServerArm for handling 72 plates |
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Genomic Solutions |
2 GeneTAC Hybridisation stations 6 modules of 2 slides |
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Molecular Devices |
Axon 4200AL microarray scanner 36 slide autoloader 4 colour lasers Analysis software: Genepix Pro 5 and 6 |
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Nimblegen | NimbleGen's 4-Bay Hybridization Systems |
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NanoDrop | 2 NanoDrops ND1000 |
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Agilent Technologies | Agilent Bioanalyzer 2100 |
Microarray Platforms
| Platform | Number of probes | Type | Purpose |
|---|---|---|---|
| Affymetrix 2.7M | 2.7 million | Standard, single array | Copy number detection |
| Affymetrix 6.0 | 1.8 million | Standard, single array | Copy number detection |
| Affymetrix 500K | 500,000 | Standard, two arrays | Copy number detection |
| Nimblegen 2.1M | 2.1 million | Standard; custom | Copy number detection |
| Nimblegen 384K | 384,000 | Standard; custom | Copy number detection |